The Lower Columbia Estuary Partnership’s (Estuary Partnership’s) Ecosystem Monitoring Program (EMP) is an integrated status and trends program for the Lower Columbia River and Estuary (LCRE). The program is designed to track trends in the overall condition of the LCRE to reduce uncertainties, provide a suite of reference sites for use as end points in the region’s habitat restoration actions, and place findings from the program into context with the larger ecosystem. When the EMP was created in 2004, most previous research in the LCRE had occurred in the lower estuary, closest to the river mouth in Reaches A and B. There was a considerable lack of research and monitoring within the tidal freshwater section of the LCRE, resulting in little basic understanding of habitats, fish use and food web dynamics in this region. The EMP and partners developed a list of questions, and a subsequent monitoring design, directed at gaining a better understanding of how estuarine resources occur and interact in the LCRE. Specific questions are defined in each section of this report. Based on the knowledge gaps identified in the LCRE and the Estuary Partnership’s and the regional partner’s goals, the EMP goals for the 2005–2010 monitoring design were to:
Track the status and trends of ecosystem conditions to inform decisions for the purpose of conserving and restoring the LCRE through: